What is the Environomics Future Science Platform?

 

Environomics (environmental genomics) is a CSIRO research and development program exploring the limits of what is possible at the intersection of genomics and environmental science.

By taking advantage of the genomics technology revolution, Environomics is creating new technologies and knowhow for better natural resource management in Australia and elsewhere. Environomics is also finding new genetic resources in nature and developing techniques for taking advantage of them.

Environomics is a collaborative venture bringing together experts in molecular biology, ecology and big data science from CSIRO and the university sector.

Transcript available from: https://www.csiro.au/NCMI/Vimeo/environomics-animation/video-transcript

An introduction to the CSIRO’s Environomics Future Science Platform

Why it matters

Australia is a mega-diverse country. Our biodiversity is beautiful and immensely valuable. It provides billions of dollars in revenue and jobs, and unique resource for innovation, science and industry.

Maintaining our biological resources is challenging. Conventional tools for understanding, monitoring and responding to environmental needs rarely offer the detail, scalability and speed that decision makers need.

“Hidden within Australia’s biodiversity are genetic resources to enhance crops, new materials for manufacturing and insights into biological processes that can give industries an edge and environmental managers vital insights into how ecosystems work”.

What genomics offers environmental science

The genomics technology revolution emerged during the past decade from the convergence of advances in molecular biology, nano-engineering and data science. It has changed the face of life sciences and revolutionised medicine.

DNA is the original “big data”. It can tell us an animal or plant’s identity, condition and function, its species, how it’s feeling and what it does in the ecosystem! Just like in medicine where genomic diagnostics can help us understand and cure diseases, the information in DNA can be used to measure and understand the natural world.

Environomics in practice

Scientists can now rapidly and inexpensively read and understand the function of entire genomes belonging to wild animals, plants and microbes. We can do this for whole ecological communities without even seeing or capturing them. We can use autonomous vehicles like drones to do it “on the fly”. Our quick and non-invasive ways to collect detailed information about nature creates many useful opportunities, for example:

  • quickly and accurately identify species and map their distributions
  • measure the stresses organisms experience and track environmental health
  • identify novel functions organisms perform within ecosystems and make use of them.

The Environomics Future Science Platform (Environomics FSP) is exploring these and other emerging applications of genomics to environmental science. Please check out our science portfolio for just some examples of what is possible.

Transcript available from: https://www.csiro.au/Vimeo/environomics_second/video-transcript

Find out how we are using new genomics technologies to solve environmental problems.

Our research themes

A chart of letters with different colours highlighting similar groupings of the letters.

Genomic resources

We have three major areas of discovery underway to explore and advance our ability to maximise the use of environmental genomic resources.

Advanced environmental applications

We are exploring emerging applications of genomics to environmental science.

Next-generation bioinformatics

We are developing new tools and methods to solve the unique data analysis challenges created by large genomic datasets.

News

dartR Version 2 release

The extensive improvements now available in dartR Version 2 makes it even easier to analyse large genomic datasets.

Environomics Newsletter October 2021

Read our latest newsletter, featuring research, people, the first eDNA conference and jobs.

Specimens of preserved lizards in a liquid in a clear glass jar.

Recovery of good quality DNA from preserved specimens

Dr Erin Hahn, early career researcher with the Environomics FSP and colleagues, have recently published a paper documenting a simple screening method to identify preserved specimens likely to yield good quality DNA data.

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The Environomics FSP leader is Dr Oliver Berry.

Acknowlegements

 

The work of the  Environomics FSP is made possible through the generous support of Bioplatforms Australia.

Our partners

The Environomics FSP is hosted by CSIRO’s National Collections and Marine Infrastructure (NCMI) business unit and our partners business units are Oceans & Atmosphere, Land & Water, Data61, Health & Biosecurity, Agriculture & Food, and NCMI. We also work with staff from the Manufacturing business unit.

Our external partners include Bioplatforms Australia , Atlas of Living Australia , Integrated Marine Observing System, Centre for Biodiversity Analysis(ANU),  Curtin University TrEnD Lab, University of Canberra Institute for Applied Ecology, along with international collaboration networks such as 1000 Insects Transcriptomes Project , 10 000 Bird Genomes Project , and the Earth Microbiome Project