Publications

Quantitative Imaging


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Publications of year 2013
Books and proceedings
  1. C. Sun, T. Bednarz, T. D. Pham, P. Vallotton, and D. Wang. Proceedings of International Symposium on Computational Models for Life Sciences, volume 1559. American Institute of Physics, 2013. [WWW] [bibtex-entry]

Articles in journal or book chapters
  1. R. Li and P. K. Robertson. Towards Perceptual Control of Markov Random Field Textures. In G. Grinstein and H. Levkowitz, editors,Perceptual Issues in Visualization, chapter 10 . Springer Science Business Media, 2013. [bibtex-entry]

  2. L. Bennett, C. Kersaitis, S. L. Macaulay, G. Münch, G. Niedermayer, J. Nigro, M. Payne, P. Sheean, P. Vallotton, D. Zabaras, and M. Bird. Vitamin D2-Enriched Button Mushroom (Agaricus bisporus) Improves Memory in Both Wild Type and APPswe/PS1dE9 Transgenic Mice. PLOS ONE, 2013. [DOI] [bibtex-entry]

  3. J. G. Burchfield, J. Lu, D. J. Fazakerley, S. X. Tan, Y. Ng, K. Mele, M. J. Buckley, W. Han, W. E. Hughes, and D. E. James. Novel Systems for Dynamically Assessing Insulin Action in Live Cells Reveals Heterogeneity in the Insulin Response. Traffic, 14(3):259--273, March 2013. [DOI] [bibtex-entry]

  4. L. Domanski, T. Bednarz, T. Gureyev, L. Murray, B. E. Huang, Ya. I. Nesterets, D. Thompson, E. Jones, C. Cavanagh, D. Wang, P. Vallotton, C. Sun, A. Khassapov, A. Stevenson, S. Mayo, M. Morell, A. W. George, and J. A. Taylor. Applications of Heterogeneous Computing in Computational and Simulation Science. International Journal of Computational Science and Engineering, 8(3):240--252, 2013. [DOI] [bibtex-entry]

  5. E. S. Gloag, L. Turnbull, A. Huang, P. Vallotton, H. Wang, L. M. Nolan, L. Mililli, C. Hunt, J. Lua, S. R. Osvath, L. G. Monahan, R. Cavaliere, I. G. Charles, M. P. Wand, M. L. Geed, R. Prabhakar, and C. B. Whitchurch. Self-organization of bacterial biofilms is facilitated by extracellular DNA. PNAS, 110(28):11541--11546, 2013. [DOI] [bibtex-entry]

  6. Y. Guo, J. Wall, J. Li, and S. West. Intelligent Model Based Fault Detection and Diagnosis for HVAC System Using Statistical Machine Learning Methods. ASHRAE Transactions, 119:1--8, 2013. [DOI] [bibtex-entry]

  7. L. Jiang, S. Luo, and J. Li. Intelligent electrical appliance event recognition using multi-load decomposition. Advanced Materials Research, 805-806:1039--1045, September 2013. [DOI] [bibtex-entry]

  8. J. Li, Y. Guo, G. Platt, and J. K Ward. Renewable Energy Aggregation with Intelligent Battery Controller. Journal Renewable Energy, 4:220--228, November 2013. [DOI] [bibtex-entry]

  9. X. Li, S. Luo, and J. Li. Liver Segmentation from CT Image Using Fuzzy Clustering and Level Set. Journal of Signal and Information Processing, 4:36--42, August 2013. [DOI] [bibtex-entry]

  10. J. Li, G. Platt, and G. James. Demand Management of Distributed Energy Resources Based on GA Optimization. Journal of Dynamic Systems, Measurement and Control, 136:0210141--0210147, March 2013. [DOI] [bibtex-entry]

  11. J. Li, S. West, and G. Platt. Power Signature Based NonIntrusive Load Disaggregation. International Journal of Modelling, Identification and Control, 20:16--24, 2013. [DOI] [bibtex-entry]

  12. S. Luo and J. Li. Nonrigid Object Modelling and Visualization for Hepatic Surgery Planning in e-Health. Advances in Multimedia Modeling, 7733:521--524, January 2013. [DOI] [bibtex-entry]

  13. C. Nickson, Y. Arzhaeva, Z. Aitken, T. Elgindy, M. Buckley, M. Li, D. R. English, and A. M. Kavanagh. AutoDensity: An automated method to measure mammographic breast density that predicts breast cancer risk and screening outcomes. Breast Cancer Research, 15:R80, 2013. [DOI] [bibtex-entry]

  14. P. Vallotton. Size matters: Filamentous bacteria drive interstitial vortex formation and colony expansion in Paenibacillus vortex. Cytometry A, 83(12):1105--1112, December 2013. [DOI] [bibtex-entry]

  15. P. Vallotton and S. Olivier. Tri-track: free software for large scale particle tracking. Microscopy and Microanalysis, 19(2):451--460, April 2013. [DOI] [bibtex-entry]

  16. J. Wall, J. Li, and G. Platt. An Application of a Soft Real-Time Genetic Algorithm for HVAC System Control. International Journal of Emerging Trends and Technology in Computer Science, 2:424--434, May-June 2013. [DOI] [bibtex-entry]

  17. C. Zhang, C. Sun, and T. D. Pham. Segmentation of Clustered Nuclei Based on Concave Curve Expansion. Journal of Microscopy, 251(1):57--67, July 2013. [DOI] [bibtex-entry]

  18. C. Zhang, C. Sun, P. Vallotton, M. Fenech, and T. D. Pham. Automatic Nuclear Bud Detection Using Ellipse Fitting, Moving Sticks, or Top-hat Transformation. Journal of Microscopy, 252(2):122--134, November 2013. [DOI] [bibtex-entry]

Conference articles
  1. X. Bai, C. Sun, P. Wang, and F. Zhou. Shortest path based splitting line finding for touching cells. In International Symposium on Computational Models for Life Sciences, Sydney, Australia, pages 67--76, 27-29 November 2013. [DOI] [bibtex-entry]

  2. T. Bednarz, P. Szul, Y. Arzhaeva, D. Wang, N. Burdett, A. Khassapov, S. Chen, P. Vallotton, R. Lagerstrom, T. Gureyev, and J. Taylor. Biomedical image analysis and processing in clouds. In 2013 International Symposium on Computational Models for Life Sciences, volume 1559, Sydney, Australia, pages 77--79, 27-29 November 2013. AIP. [bibtex-entry]

  3. S. Chen, T. Bednarz, P. Szul, D. Wang, Y. Arzhaeva, N. Burdett, A.hassapov, and J. Zic. Galaxy + Hadoop: Toward a Collaborative and Scalable Image Processing Toolbox in Cloud. In 11th International Conference on Service Oriented Computing, Berlin, Germany, pages 339-351, 2-5 December 2013. [bibtex-entry]

  4. M. Hosseini, A. Sowmya, P. Vallotton, and T. Bednarz. High precision localization of bacteria. In 2013 International Symposium on Computational Models for Life Sciences, volume 1559, Sydney, Australia, pages 215--220, 27-29 November 2013. AIP. [bibtex-entry]

  5. M. Hosseini, P. Vallotton, T. Bednarz, and A. Sowmya. A study of touchless versus touch-based interactions with bacterial biofilm images. In Proceedings of the 12th ACM SIGGRAPH International Conference on Virtual-Reality Continuum and Its Applications in Industry, Hong Kong, pages 285--290, November 2013. ACM. [bibtex-entry]

  6. C. Huang, L. Zhang, D. Wang, T. Wu, and Q. Tong. Decomposition of Volume Scattering, Polarized Light and Chlorophyll Fluorescence by In-Situ Polarization Measurement. In IEEE International Geoscience and Remote Sensing Symposium, Melbourne, Australia, 21-26 July 2013. [bibtex-entry]

  7. L. Jiang, S. Luo, and J. Li. Automatic power load event detection and appliance classification based on power harmonic features in nonintrusive appliance load monitoring. In 8th IEEE CONFERENCE ON INDUSTRIAL ELECTRONICS AND APPLICATIONS, Melbourne, Australia , pages 1083--1088, 19-21 June 2013. [bibtex-entry]

  8. R. Lagerstrom, Y. Arzhaeva, L. Bischof, S. Haberle, F. Hopf, and D. Lovell. A Comparison of Classification Algorithms within the Classifynder Pollen Imaging System. In International Symposium on Computational Models for Life Sciences, Sydney, Australia, pages 250--259, 27-29 November 2013. [bibtex-entry]

  9. S. Luo, X. Li, and J. Li. Improvement of Liver Segmentation by Combining High Order Statistical Texture Features with Anatomical Structural Features. In 2013 International Conference on Biomedical Engineering, Beijing, China , pages 67--72, 14-16 June 2013. [bibtex-entry]

  10. R. Marchant and P. T. Jackway. Local feature analysis using a sinusoidal signal model derived from higher-order Riesz transforms. In IEEE International Conference on Image Processing, Melbourne, Australia, pages 3489--3493, 15-18 September 2013. [bibtex-entry]

  11. C. Nguyen, D. Lovell, R. Oberprieler, D. Jennings, M. Adcock, E. Gates-Stuart, and J. La Salle. Virtual 3D Models of Insects for Accelerated Quarantine Control. In 2013 IEEE International Conference on Computer Vision Workshops (ICCVW 2013), pages 161--167, 2013. [WWW] [DOI] [bibtex-entry]

  12. M. Payne, G. Münch, and P. Vallotton. A new GUI based toolbox to compare particle tracking approaches. In International Symposium on Computational Models for Life Sciences, volume 1559, Sydney, Australia, pages 175--184, 27-29 November 2013. AIP. [bibtex-entry]

  13. M. J. Piggott, P. Vallotton, J. A. Taylor, and T. Bednarz. Accelerated implementation of level set based segmentation. In Scott McCue, Tim Moroney, Dann Mallet, and Judith Bunder, editors, Proceedings of the 16th Biennial Computational Techniques and Applications Conference, CTAC-2012, volume 54 of ANZIAM J., pages C327--C344, June 2013. [bibtex-entry]

  14. H. Rezatofighi, S. Gould, B.-N. Vo, R. Hartley, K. Mele, and W. E. Hughes. A multiple model probability hypothesis density tracker for time-lapse cell microscopy sequences. In IPMI, 2013. [bibtex-entry]

  15. H. Rezatofighi, W. T. E. Pitkeathly, S. Gould, R. Hartley, K. Mele, W. E. Hughes, and J. G. Burchfield. A Framework for Generating Realistic Synthetic Sequences of Total Internal Reflection Flourescence Microscopy Images. In ISBI, 2013. [bibtex-entry]

  16. X. Sirault, J. Fripp, A. Paproki, P. Kuffner, H. Daily, R. Li, and R. Furbank. PlantScan: a three-dimensional phenotyping platform for capturing the structural dynamic of plant development and growth. In R. Sievanen, E. Nikinmaa, C. Godin, A. Lintunen, and P. Nygren, editors, Proceedings of the Seventh International Conference on Functional-Structural Plant Models, pages 45--48, 2013 . [bibtex-entry]

  17. X. Sirault, J. Fripp, A. Paproki, P. Kuffner, C. Nguyen, R. Li, H. Daily, J. Guo, and R. Furbank. PlantScanâ„¢: a three-dimensional phenotyping platform for capturing the structural dynamic of plant development and growth. In FSPM2013 Proceedings, 2013. [bibtex-entry]

  18. C. Sun. Trinocular Stereo Image Rectification in Closed-form Just Using Fundamental Matrices. In IEEE International Conference on Image Processing, Melbourne, Australia, pages 2212--2216, 15-18 September 2013. [DOI] [bibtex-entry]

  19. D. Wang, T. Bednarz, Y. Arzhaeva, P. Szul, S. Chen, N. Burdett, A. Khassapov, T. Gureyev, and J. Taylor. Cloud Computing for High Performance Image Analysis on a National Infrastructure. In 13th IEEE/ACM International Symposium On Cluster, Cloud And Grid Computing, Delft, Netherlands, pages 172--173, 13-16 May 2013. [bibtex-entry]

  20. D. Wang, T. Bednarz, Y. Arzhaeva, P. Szul, S. Chen, N. Burdett, A. Khassapov, T. Gureyev, and J. Taylor. Cloud-based Services for Biomedical Image Analysis. In The 3rd International Conference on Cloud Computing and Services Science, Aachen, Germany, pages 350--357, 8-10 May 2013. [bibtex-entry]

  21. M. Yuwono, S. W. Su, Y. Guo, J. Wall, J. Li, and S. West. Automatic Feature Selection using Multiobjective Cluster Optimization for Fault Detection in a Heating Ventilating and Air Conditioning System. In 1st International Conferenec on Artificial Intelligence, Modelling and Simulation, Malaysia , 3-5 December 2013. [bibtex-entry]

  22. C. Zhang, C. Sun, R. Davey, R. Su, L. Bischof, P. Vallotton, D. Lovell, S. Hope, S. Lehnert, and T. D. Pham. Tubule Detection in Testis Images Using Boundary Weighting and Circular Shortest Path. In IEEE Engineering in Medicine and Biology Society Conference, Osaka, Japan, pages 3319--3322, 3-7 July 2013. [DOI] [bibtex-entry]


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