Publications

Quantitative Imaging


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Publications of year 2015
Books and proceedings
  1. C. Sun, T. Bednarz, T. D. Pham, P. Vallotton, and D. Wang. Signal and Image Analysis for Biomedical and Life Sciences, volume 823 of Advances in Experimental Medicine and Biology. Springer, 2015. [WWW] 
    @book{sun-etal15siabls,
author = {C. Sun and T. Bednarz and T. D. Pham and P. Vallotton and D. Wang},
title = {Signal and Image Analysis for Biomedical and Life Sciences},
year = {2015},
month = {},
volume = {823},
publisher = {Springer},
series = {Advances in Experimental Medicine and Biology},
address = {},
edition = {},
url = {http://link.springer.com/book/10.1007/978-3-319-10984-8} 
}

Articles in journal or book chapters
  1. T. Bednarz, D. Wang, Y. Arzhaeva, R. Lagerstrom, P. Vallotton, N. Budett, A. Khassapov, P. Szul, S. Chen, C. Sun, L. Domanski, D. Thompson, T. Gureyev, and J. Taylor. Cloud Based Toolbox for Image Analysis, Processing and Reconstruction Tasks. In C. Sun, T. Bednarz, T. D. Pham, P. Vallotton, and D. Wang, editors,Signal and Image Analysis for Biomedical and Life Sciences, chapter 11, pages 191--205. Springer, 2015. [DOI] 
    @incollection{bednarz-etal15,
author = {Bednarz, T. and Wang, D. and Arzhaeva, Y. and R. Lagerstrom and P. Vallotton and Budett, N. and A. Khassapov and Szul, P. and Chen, S. and C. Sun and L. Domanski and D. Thompson and Gureyev, T. and Taylor, J.},
title = {Cloud Based Toolbox for Image Analysis, Processing and Reconstruction Tasks},
year = {2015},
month = {},
volume = {},
booktitle = {Signal and Image Analysis for Biomedical and Life Sciences},
editor = {C. Sun and T. Bednarz and T. D. Pham and P. Vallotton and D. Wang},
publisher = {Springer},
chapter = {11},
pages = {191--205},
series = {},
address = {},
edition = {},
doi = {http://link.springer.com/chapter/10.1007/978-3-319-10984-8_11} 
}

  2. R. Lagerstrom, K. Holt, Y. Arzhaeva, L. Bischof, S. Haberle, F. Hopf, and D. Lovell. Pollen Image Classification Using the Classifynder System: Algorithm Comparison and a Case Study on New Zealand Honey. In C. Sun, T. Bednarz, T. D. Pham, P. Vallotton, and D. Wang, editors,Signal and Image Analysis for Biomedical and Life Sciences, chapter 12, pages 207--226. Springer, 2015. [DOI] 
    @incollection{lagerstrom-etal15chapter,
author = {R. Lagerstrom and K. Holt and Y. Arzhaeva and L. Bischof and S. Haberle and F. Hopf and D. Lovell},
title = {Pollen Image Classification Using the Classifynder System: Algorithm Comparison and a Case Study on New Zealand Honey},
year = {2015},
month = {},
volume = {},
booktitle = {Signal and Image Analysis for Biomedical and Life Sciences},
editor = {C. Sun and T. Bednarz and T. D. Pham and P. Vallotton and D. Wang},
publisher = {Springer},
chapter = {12},
pages = {207--226},
series = {},
address = {},
edition = {},
doi = {http://link.springer.com/chapter/10.1007/978-3-319-10984-8_12} 
}

  3. R. Li, D. Wang, C. Sun, R. Lagerstrom, H. Tan, Y. He, and T. Xiao. Towards Automated Quantitative Vasculature Understanding via Ultra High-Resolution Imagery. In C. Sun, T. Bednarz, T. D. Pham, P. Vallotton, and D. Wang, editors,Signal and Image Analysis for Biomedical and Life Sciences, chapter 10, pages 177--189. Springer, 2015. [DOI] 
    @incollection{li-etal15chapter,
author = {R. Li and D. Wang and C. Sun and R. Lagerstrom and H. Tan and Y. He and T. Xiao},
title = {Towards Automated Quantitative Vasculature Understanding via Ultra High-Resolution Imagery},
year = {2015},
month = {},
volume = {},
booktitle = {Signal and Image Analysis for Biomedical and Life Sciences},
editor = {C. Sun and T. Bednarz and T. D. Pham and P. Vallotton and D. Wang},
publisher = {Springer},
chapter = {10},
pages = {177--189},
series = {},
address = {},
edition = {},
doi = {http://link.springer.com/chapter/10.1007/978-3-319-10984-8_10} 
}

  4. M. Adcock and C. Gunn. Using Projected Light for Mobile Remote Guidance. Computer Supported Cooperative Work, 24(6):591--611, 2015. 
    @article{adcock2015using,
title={Using Projected Light for Mobile Remote Guidance},
author={Adcock, M. and Gunn, C.},
journal={Computer Supported Cooperative Work},
volume={24},
number={6},
pages={591--611},
year={2015},
publisher={Springer Netherlands} 
}

  5. N. M. Altarawneh, S. Luo, B. Regan, and C. Sun. A Modified Distance Regularized Level Set Model for Liver Segmentation from CT Images. Signal and Image Processing: An International Journal, 6(1):1--11, February 2015. [DOI] 
    @article{altarawneh-etal15sipij,
author = {N. M. Altarawneh and S. Luo and B. Regan and C. Sun},
title = {A Modified Distance Regularized Level Set Model for Liver Segmentation from {CT} Images},
year = {2015},
month = Feb,
volume = {6},
number = {1},
doi = {http://doi.org/10.5121/sipij.2015.6101},
journal = {Signal and Image Processing: An International Journal},
pages = {1--11} 
}

  6. I. Arganda-Carreras, D. Berger, D. Ciresan, A. Giusti, L. M. Gambardella, J. Schmidhuber, D. Laptev, S. Dwivedi, J. Buhmann, T. Liu, M. Seyedhosseini, T. Tasdizen, L. Kamentsky, R. Burget, V. Uher, X. Tan, C. Sun, T. D. Pham, E. Bas, M. G. Uzunbas, S. Turaga, A. Cardona, J. Schindelin, and H. S. Seung. Crowdsourcing the creation of image segmentation algorithms for connectomics. Frontiers in Neuroanatomy, 9:142, November 2015. [DOI] 
    @article{arganda-carreras-etal15fn,
author = {I. Arganda-Carreras and D. Berger and D. Ciresan and A. Giusti and L. M. Gambardella and J. Schmidhuber and D. Laptev and S. Dwivedi and J. Buhmann and T. Liu and M. Seyedhosseini and T. Tasdizen and L. Kamentsky and R. Burget and V. Uher and X. Tan and C. Sun and T. D. Pham and E. Bas and M. G. Uzunbas and S. Turaga and A. Cardona and J. Schindelin and H. S. Seung},
title = {Crowdsourcing the creation of image segmentation algorithms for connectomics},
journal = {Frontiers in Neuroanatomy},
year = {2015},
volume = {9},
number = {},
pages = {142},
month = Nov,
doi = {http://doi.org/10.3389/fnana.2015.00142},
note = {} 
}

  7. X. Bai, P. Wang, C. Sun, F. Zhou, Y. Zhang, and C. Meng. Finding Splitting Lines for Touching Cell Nuclei with a Shortest Path Algorithm. Computers in Biology and Medicine, 63:277--286, August 2015. [DOI] 
    @article{bai-etal15cbm,
author = {X. Bai and P. Wang and C. Sun and F. Zhou and Y. Zhang and C. Meng},
title = {Finding Splitting Lines for Touching Cell Nuclei with a Shortest Path Algorithm},
year = {2015},
month = Aug,
volume = {63},
number = {},
journal = {Computers in Biology and Medicine},
pages = {277--286},
doi = {http://doi.org/10.1016/j.compbiomed.2014.10.008} 
}

  8. D. C. Jeffares, C. Rallis, A. Rieux, D. Speed, M. Prevorovsky, T. Mourier, F. X. Marsellach, Z. Iqbal, W. Lau, T. M. K. Cheng, R. Pracana, M. Mulleder, J. L. D. Lawson, A. Chessel, S. Bala, G. Hellenthal, B. O'Fallon, T. Keane, J. T. Simpson, L. Bischof, B. Tomiczek, D. A. Bitton, T. Sideri, S. Codlin, J. E. E. U. Hellberg, L. van Trigt, L. Jeffery, J.-J. Li, S. Atkinson, M. Thodberg, M. Febrer, K. McLay, N. Drou, W. Brown, J. Hayles, R. E. Salas, M. Ralser, N. Maniatis, D. J. Balding, F. Balloux, R. Durbin, and J. Bahler. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat Genet, 47(3):235--241, March 2015. [DOI] 
    @article{jeffares-etal15,
author = {Jeffares, D. C. and Rallis, C. and Rieux, A. and Speed, D. and Prevorovsky, M. and Mourier, T. and Marsellach, F. X. and Iqbal, Z. and Lau, W. and Cheng, T. M. K. and Pracana, R. and Mulleder, M. and Lawson, J. L. D. and Chessel, A. and Bala, S. and Hellenthal, G. and O'Fallon, B. and Keane, T. and Simpson, J. T. and Bischof, L. and Tomiczek, B. and Bitton, D. A. and Sideri, T. and Codlin, S. and Hellberg, J. E. E. U. and van Trigt, L. and Jeffery, L. and Li, J.-J. and Atkinson, S. and Thodberg, M. and Febrer, M. and McLay, K. and Drou, N. and Brown, W. and Hayles, J. and Salas, R. E. and Ralser, M. and Maniatis, N. and Balding, D. J. and Balloux, F. and Durbin, R. and Bahler, J.},
doi = {http://doi.org/10.1038/ng.3215},
journal = {Nat Genet},
month = mar,
number = {3},
pages = {235--241},
publisher = {Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
title = {{The genomic and phenotypic diversity of Schizosaccharomyces pombe}},
volume = {47},
year = {2015} 
}

  9. M. Li, S. Liu, Z. Sun, C. Sun, and Y. Jia. Descent Images Based Landing Area Terrain Reconstruction Technology for China's Chang'e-3 Lunar Exploration Mission. The Imaging Science Journal, 63(8):440--446, November 2015. [DOI] 
    @article{li-etal15isj,
author = {M. Li and S. Liu and Z. Sun and C. Sun and Y. Jia},
title = {Descent Images Based Landing Area Terrain Reconstruction Technology for {C}hina's {Chang'e-3} Lunar Exploration Mission},
year = {2015},
month = Nov,
volume = {63},
number = {8},
journal = {The Imaging Science Journal},
pages = {440--446},
doi = {http://doi.org/10.1179/1743131X15Y.0000000029} 
}

  10. H. Rezatofighi, S. Gould, B. T. Vo, B.-N. Vo, K. Mele, and R. Hartley. Multi-Target Tracking With Time-Varying Clutter Rate and Detection Profile: Application to Time-Lapse Cell Microscopy Sequences. IEEE Transactions on Medical Imaging, 34(6):1336--1348, June 2015. [DOI] 
    @article{Rezatofighi:TMI2015,
author = {H. Rezatofighi and S. Gould and B. T. Vo and B.-N. Vo and K. Mele and R. Hartley},
title = {Multi-Target Tracking With Time-Varying Clutter Rate and Detection Profile: Application to Time-Lapse Cell Microscopy Sequences },
year = {2015},
month = {June},
volume = {34},
number = {6},
journal = {IEEE Transactions on Medical Imaging},
pages = {1336--1348},
doi = {http://doi.org/10.1109/TMI.2015.2390647} 
}

  11. X. Tan, C. Sun, X. Sirault, R. Furbank, and T. D. Pham. Feature Matching in Stereo Images Encouraging Uniform Spatial Distribution. Pattern Recognition, 48(8):2530--2542, August 2015. [DOI] 
    @article{tan-etal15pr,
author = {X. Tan and C. Sun and X. Sirault and R. Furbank and T. D. Pham},
title = {Feature Matching in Stereo Images Encouraging Uniform Spatial Distribution},
year = {2015},
month = Aug,
volume = {48},
number = {8},
journal = {Pattern Recognition},
pages = {2530--2542},
doi = {http://doi.org/10.1016/j.patcog.2015.02.026} 
}

  12. H. Tan, D. Wang, Y. Xue, Y. Wang, Y. Yang, and T. Xiao. Implementation of Parallel Computation and Accelerating Analysis for 3D Thinning Skeletonisation Based on OpenMP. ACTA Optica Sinica, 35(11):1117003, 2015. 
    @article{Tan-etal15ACTA,
author = {H. Tan and D. Wang and Y. Xue and Y. Wang and Y. Yang and T. Xiao},
title = {Implementation of Parallel Computation and Accelerating Analysis for 3D Thinning Skeletonisation Based on {OpenMP}},
year = {2015},
month = {},
volume = {35},
number = {11},
doi = {},
journal = {ACTA Optica Sinica},
pages = {1117003} 
}

  13. P. Vallotton, B. Angel, M. McCall, M. Osmond, and J. Kirby. Imaging nanoparticle-algae interactions in three dimensions using Cytoviva microscopy. Journal of Microscopy, 257(2):166--169, 2015. [DOI] 
    @article{vallotton-etal15jmi,
author = {P. Vallotton and B. Angel and M. McCall and M. Osmond and J. Kirby},
title = {Imaging nanoparticle-algae interactions in three dimensions using Cytoviva microscopy},
journal = {Journal of Microscopy},
year = {2015},
month = {},
volume = {257},
number = {2},
pages = {166--169},
doi = {http://doi.org/10.1111/jmi.12199} 
}

  14. M. Yuwono, Y. Guo, J. Wall, J. Li, S. West, G. Platt, and S. W Su. Unsupervised Feature Selection using Swarm Intelligence and Consensus Clustering for Automatic Fault Detection and Diagnosis in Heating Ventilation and Air Conditioning Systems. Journal of Applied Soft Computing, 34:402--425, September 2015. [DOI] 
    @article{Yuwono-etal15jasc,

 title={Unsupervised Feature Selection using Swarm Intelligence and Consensus Clustering for Automatic Fault Detection and Diagnosis in Heating Ventilation and Air Conditioning Systems},

 author={M. Yuwono and Y. Guo and J. Wall and J. Li and S. West and G. Platt and S. W Su},

 journal={Journal of Applied Soft Computing},

 year={2015},

 month={September},

 volume={34},

 pages={402--425},

 doi = {http://doi.org/10.1016/j.asoc.2015.05.030}
 
}

  15. C. Zhang, C. Sun, R. Su, and T. D. Pham. Clustered nuclei splitting via curvature information and gray-scale distance transform. Journal of Microscopy, 259(1):36--52, July 2015. [DOI] 
    @article{zhang-etal15jmi,
author = {C. Zhang and C. Sun and R. Su and T. D. Pham},
title = {Clustered nuclei splitting via curvature information and gray-scale distance transform},
year = {2015},
month = Jul,
volume = {259},
number = {1},
journal = jmicrosc,
pages = {36--52},
doi = {http://doi.org/10.1111/jmi.12246} 
}

  16. L. Zhu, Y. Zhou, D. Zhang, D. Wang, H. Wang, and X. Wang. Parallel multi-level 2D-DWT on CUDA GPUs and its application in ring artifact removal. Concurrency and Computation: Practice and Experience, 27(17):5188--5202, December 2015. [DOI] 
    @article{zhu-etal15,
author = {L. Zhu and Y. Zhou and D. Zhang and D. Wang and H. Wang and X. Wang},
title = {Parallel multi-level {2D-DWT} on {CUDA GPUs} and its application in ring artifact removal},
year = {2015},
volume = {27},
month = {December},
journal = {Concurrency and Computation: Practice and Experience},
number = {17},
doi = {http://doi.org/10.1002/cpe.3559},
pages = {5188--5202} 
}

Conference articles
  1. S. Anderson, M. Adcock, B. Mantle, J. La Salle, C. Nguyen, and D. Lovell. Towards web-based semantic enrichment of 3D insects. In Proceedings of the 20th International Conference on 3D Web Technology, pages 163--164, 2015. ACM. 
    @inproceedings{anderson2015towards,
title={Towards web-based semantic enrichment of 3D insects},
author={Anderson, S. and Adcock, M. and Mantle, B. and La Salle, J. and Nguyen, C. and Lovell, D.},
booktitle={Proceedings of the 20th International Conference on 3D Web Technology},
pages={163--164},
year={2015},
organization={ACM} 
}

  2. Y. Guo, J. Wall, J. Li, and S. West. Intelligent Sensor Monitoring and Fault Detection in Heating Ventilation and Air Conditioning Systems. In the 9th International Conference on Sensing Technology, Auckland, New Zealand , 18-20 December 2015. IEEE. 
    @inproceedings{Guo-etal15icst,

 author = {Y. Guo and J. Wall and J. Li, and S. West},

 title = {Intelligent Sensor Monitoring and Fault Detection in Heating Ventilation and Air Conditioning Systems},

 year = {2015},

 month = {18-20 December},

 volume = {},

 booktitle = {the 9th International Conference on Sensing Technology},

 editor = {},

 organization = {},

 doi = {},

 pages = {},

 publisher = {IEEE},

 address = {Auckland, New Zealand}
 
}

  3. D. Jenkins, M. Mahoney, R. Roest, H. Lomas, R. Pearce, R. Li, S. Mayo, and D. Wang. Micro-CT analysis of coke and its relationship to coke quality indicators. In 7th International Congress on the Science and Technology of Ironmaking, Cleveland Ohio, USA, 4-7 May 2015. 
    @inproceedings{jenkins-etal15icsti,
author = {Jenkins, D. and Mahoney, M. and Roest, R. and Lomas, H. and Pearce, R. and Li, R. and Mayo, S. and Wang, D.},
title = {Micro-{CT} analysis of coke and its relationship to coke quality indicators},
year = {2015},
month = {4-7 May},
volume = {},
booktitle = {7th International Congress on the Science and Technology of Ironmaking},
editor = {},
organization = {},
pages = {},
publisher = {},
address = {Cleveland Ohio, USA} 
}

  4. R. Li, D. R. Jenkins, and R. Pearce. Texture-based identification of inert-maceral derived components in metallurgical coke. In T. Weber, M. J. McPhee, and R. S. Anderssen, editors, MODSIM2015, 21st International Congress on Modelling and Simulation, pages 85--90 , 2015. Modelling and Simulation Society of Australia and New Zealand. 
    @inproceedings{modsim2015,

 booktitle = {MODSIM2015, 21st International Congress on Modelling and Simulation},

 author = {Li, R. and Jenkins, D. R. and Pearce, R.},

 title = {Texture-based identification of inert-maceral derived components in metallurgical coke},

 editor = {Weber, T. and McPhee, M. J. and Anderssen, R. S.},

 publisher = {Modelling and Simulation Society of Australia and New Zealand},

 year = {2015},

 pages = {85--90}
 
}

  5. X. Li, S. Luo, Q. Hu, J. Li, and D. Wang. Rib Suppression in Chest Radiographs for Lung Nodule. In International Conference on Information and Automation, Lijing, China , pages 50--55, 8 - 10 August 2015. IEEE. 
    @inproceedings{li-etal15icia,

 author = { X. Li and S. Luo and Q. Hu and J. Li and D. Wang },

 title = {Rib Suppression in Chest Radiographs for Lung Nodule},

 year = {2015},

 month = {8 - 10 August },

 volume = {},

 booktitle = {International Conference on Information and Automation},

 editor = {},

 organization = {},

 doi = { },

 pages = {50--55},

 publisher = {IEEE},

 address = {Lijing, China}
 
}

  6. S. Luo, X. Li, D. Wang, J. Li, and C. Sun. Automatic Fish Recognition and Counting in the Video Footage of Fishery Operations. In International Conference on Computational Intelligence and Communication Networks, Jabalpur, India , pages 296--299, 12-14 December 2015. IEEE. [DOI] 
    @inproceedings{Luo-etal15cicn,

 author = {S. Luo and X. Li and D. Wang and J. Li and C. Sun},

 title = {Automatic Fish Recognition and Counting in the Video Footage of Fishery Operations},

 year = {2015},

 month = {12-14 December},

 volume = {},

 booktitle = {International Conference on Computational Intelligence and Communication Networks},

 editor = {},

 organization = {},

 doi = {},

 pages = {296--299},

 doi = {http://doi.org/10.1109/CICN.2015.66},

 publisher = {IEEE},

 address = {Jabalpur, India}
 
}

  7. S. Luo, X. Li, D. Wang, C. Sun, J. Li, and G. Tang. Intelligent Tuna Recognition for Fisheries Monitoring. In The 12th International Computer Conference on Wavelet Active Media Technology and Information Processing, Chengdu, China , pages 158--162, 18-20 December 2015. [DOI] 
    @inproceedings{Luo-etal15iccwamtip,

 author = {S. Luo and X. Li and D. Wang and C. Sun and J. Li and G. Tang},

 title = {Intelligent Tuna Recognition for Fisheries Monitoring},

 year = {2015},

 month = {18-20 December},

 volume = {},

 booktitle = {The 12th International Computer Conference on Wavelet Active Media Technology and Information Processing},

 editor = {},

 organization = {},

 doi = {},

 pages = {158--162},

 doi = {http://doi.org/10.1109/ICCWAMTIP.2015.7493966},

 publisher = {},

 address = {Chengdu, China}
 
}

  8. D. Wang, H. Tan, R. Li, Y. He, and T. Xiao. Automated Quantitative Analysis of Ultra High-Resolution 3D images of Vasculature and Microvasculature. In Symposium on Multi-scale and Multi-dimensional Synchrotron Radiation Imaging, Shanghai, China, 3-6 November 2015. 
    @inproceedings{wang-etal15MMSRI,
author = {D. Wang and H. Tan and R. Li and Y. He and T. Xiao},
title = {Automated Quantitative Analysis of Ultra High-Resolution 3D images of Vasculature and Microvasculature},
year = {2015},
month ={3-6 November},
volume = {},
booktitle = { Symposium on Multi-scale and Multi-dimensional Synchrotron Radiation Imaging },
editor = {},
organization = {},
pages = {},
publisher = {},
address = {Shanghai, China},
url = {} 
}


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