Publications

Quantitative Imaging


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Publications of year 2009
Articles in journal or book chapters
  1. P. Vallotton, A. Phatak, and M. Berman. Spectral Imaging and Unmixing. In Ewa Goldys, editor,Fluorescence Applications in Biotechnology and Life Sciences, pages 117--139. Wiley, 2009. 
    @incollection{vallotton-etal09chapt,
author = {P. Vallotton and A. Phatak and M. Berman},
title = {Spectral Imaging and Unmixing},
year = {2009},
month = {},
volume = {},
booktitle = {Fluorescence Applications in Biotechnology and Life Sciences},
editor = {Ewa Goldys},
publisher = {Wiley},
chapter = {},
pages = {117--139},
series = {},
address = {},
edition = {} 
}

  2. P.G. Allingham, W. Barris, A. Reverter, V. Hilsenstein, R. van de Ven, and D.L. Hopkins. Sire and growth-path effects on sheep meat production. 3. Fascicular structure of lamb loin muscle (m. longissimus lumborum) and the impact on eating quality. Animal Production Science, 49(3):239--247, 2009. 
    @ARTICLE{allingham-etal09,
author = {Allingham, P.G. and Barris, W. and Reverter, A. and Hilsenstein, V. and {van de Ven}, R. and Hopkins, D.L.},
title = {Sire and growth-path effects on sheep meat production. 3. Fascicular structure of lamb loin muscle (m. longissimus lumborum) and the impact on eating quality},
journal = {Animal Production Science},
year = {2009},
volume = {49},
number = {3},
pages = {239--247} 
}

  3. X. Bai, C. Sun, and F. Zhou. Splitting touching cells based on concave points and ellipse fitting. Pattern Recognition, 42(11):2434--2446, November 2009. [DOI] 
    @article{bai-etal09pr,
author = {X. Bai and C. Sun and F. Zhou},
title = {Splitting touching cells based on concave points and ellipse fitting},
year = {2009},
month = Nov,
volume = {42},
number = {11},
journal = pr,
doi = {http://doi.org/10.1016/j.patcog.2009.04.003},
pages = {2434--2446} 
}

  4. M. Berman, A. Phatak, R. Lagerstrom, and B.R. Wood. ICE: A new method for the multivariate curve resolution of hyperspectral images. Journal of Chemometrics, 23(2):101--116, February 2009. 
    @article{berman-phatak-lagerstrom-wood09,
author = {M. Berman and A. Phatak and R. Lagerstrom and B.R. Wood},
title = {{ICE}: A new method for the multivariate curve resolution of hyperspectral images},
journal = {Journal of Chemometrics},
year = {2009},
month = {February},
volume={23},
number={2},
pages = {101--116} 
}

  5. Y. Guo, A. Zeman, and R. Li. A Reinforcement Learning Approach to Setting. International Journal of Agent Technologies and Systems, 1(2):55--70 , 2009. 
    @article{IJATS2009,

 author = {Guo, Y. and Zeman, A. and Li, R.},

 title = {A Reinforcement Learning Approach to Setting},

 journal = {International Journal of Agent Technologies and Systems},

 volume = {1},

 number = {2},

 year = {2009},

 pages = {55--70}
 
}

  6. J. La Salle, Q. Wheeler, P.T. Jackway, S. Winterton, D. Hobern, and D. Lovell. Accelerating Taxonomic Discovery Through Automated Character Extraction. Zootaxa, 2217:43--55, 2009. 
    @article{lasalle-etal09,
author = {La Salle, J. and Wheeler, Q. and Jackway, P.T. and Winterton, S. and Hobern, D. and Lovell, D.},
title = {Accelerating Taxonomic Discovery Through Automated Character Extraction},
year = {2009},
month = {},
volume = {2217},
number = {},
journal = {Zootaxa},
pages = {43--55} 
}

  7. M. Li, J. Xu, J. Yang, D. Yang, and D. Wang. Multiple Manifolds Analysis and Its Application to Fault Diagnosis. Mechanical Systems and Signal Processing, 23(8):2500--2509, November 2009. 
    @article{li-etal09,
author = {Li, M. and Xu, J. and Yang, J. and Yang, D. and Wang, D.},
title = {Multiple Manifolds Analysis and Its Application to Fault Diagnosis},
year = {2009},
month = Nov,
volume = {23},
number = {8},
journal = {Mechanical Systems and Signal Processing},
pages = {2500--2509} 
}

  8. J. A. Lopez, J. G. Burchfield, D. H. Blair, K. Mele, Y. Ng, P. Vallotton, D. E. James, and W. E. Hughes. Identification of a Distal GLUT4 Trafficking Event Controlled by Actin Polymerisation. Molecular Biology of the Cell, 20(17):3918--3929, September 2009. 
    @article{lopez-etal09,
author = {J. A. Lopez and J. G. Burchfield and D. H. Blair and K. Mele and Y. Ng and P. Vallotton and D. E. James and W. E. Hughes},
title = {Identification of a Distal GLUT4 Trafficking Event Controlled by Actin Polymerisation},
year = {2009},
month = {September},
volume = {20},
number = {17},
journal = {Molecular Biology of the Cell},
pages = {3918--3929} 
}

  9. K. Mele, J. G. Burchfield, D. E. James, W. E. Hughes, and P. Vallotton. Towards fully automated Identification of Vesicle-Membrane Fusion Events in TIRF Microscopy. IJCAET Special Issue on Engineering and Computational Technologies in the Life Sciences, 1(4):502--515, 2009. 
    @article{mele-etal09,
author = {K. Mele and J. G. Burchfield and D. E. James and W. E. Hughes and P. Vallotton},
title = {Towards fully automated Identification of Vesicle-Membrane Fusion Events in {TIRF} Microscopy},
year = {2009},
month = {},
volume = {1},
number = {4},
journal = {IJCAET Special Issue on Engineering and Computational Technologies in the Life Sciences},
pages = {502--515} 
}

  10. C. Sun, R. Beare, K. Cheong, B. J. Jung, and M. Kim. Stereoscopic Flatbed Scanner. Journal of Electronic Imaging, 18(1):013002, January-March 2009. [DOI] 
    @article{sun-etal09jei,
author = {C. Sun and R. Beare and K. Cheong and B. J. Jung and M. Kim},
title = {Stereoscopic Flatbed Scanner},
year = {2009},
month = {January-March},
volume = {18},
number = {1},
journal = {Journal of Electronic Imaging},
doi = {http://doi.org/10.1117/1.3059582},
pages = {013002} 
}

  11. C. Sun, P. Vallotton, D. Wang, J. Lopez, Y. Ng, and D. James. Membrane Boundary Extraction Using Circular Multiple Paths. Pattern Recognition, 42(4):523--530, April 2009. [DOI] 
    @article{sun-etal09pr,
author = {C. Sun and P. Vallotton and D. Wang and J. Lopez and Y. Ng and D. James},
title = {Membrane Boundary Extraction Using Circular Multiple Paths},
year = {2009},
month = Apr,
volume = {42},
number = {4},
journal = pr,
doi = {http://doi.org/10.1016/j.patcog.2008.09.029},
pages = {523--530} 
}

  12. C. Sun and P. Vallotton. Fast Linear Feature Detection Using Multiple Directional Non-Maximum Suppression. Journal of Microscopy, 234(2):147--157, May 2009. [DOI] 
    @article{sun-vallotton09jmi,
author = {C. Sun and P. Vallotton},
title = {Fast Linear Feature Detection Using Multiple Directional Non-Maximum Suppression},
year = {2009},
month = {May},
volume = {234},
number = {2},
journal = jmicrosc,
doi = {http://doi.org/10.1111/j.1365-2818.2009.03156.x},
pages = {147--157} 
}

  13. P. Vallotton and J. V. Small. Shifting views on the leading role of the lamellipodium in cell migration: Speckle tracking revisited. Journal of Cell Science, 122(12):1955--1958, June 2009. 
    @article{vallotton-small09,
author = {P. Vallotton and J. V. Small},
title = {Shifting views on the leading role of the lamellipodium in cell migration: Speckle tracking revisited},
year = {2009},
month = Jun,
volume = {122},
number = {12},
journal = {Journal of Cell Science},
pages = {1955--1958} 
}

Conference articles
  1. Y. Arzhaeva, L. Hogeweg, P. A. de Jong, B. van Ginneken, and M. A. Viergever. Global and local multi-valued dissimilarity-based classication: application to computer-aided detection of tuberculosis. In 12th International Conference on Medical Image Computing and Computer Assisted Intervention, 20-24 September 2009. 
    @inproceedings{Arzh09b,
author = {Y. Arzhaeva and L. Hogeweg and P. A. de Jong and B. van Ginneken and M. A. Viergever},
title = {Global and local multi-valued dissimilarity-based classication: application to computer-aided detection of tuberculosis},
booktitle = {12th International Conference on Medical Image Computing and Computer Assisted Intervention},
year = {2009},
month = {20-24 September} 
}

  2. L. Domanski, P. Vallotton, and D. Wang. Two and Three-Dimensional Image Deconvolution on Graphics Hardware. In Proceedings of the 18th World IMACS/MODSIM Congress, Cairns, Australia, pages 1010--1016, 13-17 July 2009. [WWW] 
    @inproceedings{domanski-etal09,
author = {L. Domanski and P. Vallotton and D. Wang},
title = {Two and Three-Dimensional Image Deconvolution on Graphics Hardware},
year = {2009},
month = {13-17 July},
volume = {},
booktitle = {Proceedings of the 18th World IMACS/MODSIM Congress},
editor = {},
organization = {},
pages = {1010--1016},
publisher = {},
url={http://www.cmis.csiro.au/iap/publications/Files/domanskiMODSIM09.pdf},
address = {Cairns, Australia} 
}

  3. R. Lagerstrom and M. Buckley. A Graph Watershed Method for Analysis and Quantification of Neurite Branching Structure. In Proceedings of the 18th World IMACS/MODSIM Congress, Cairns, Australia, pages 762--767, 13-17 July 2009. 
    @inproceedings{lagerstrom-buckley09,
author = {R. Lagerstrom and M. Buckley},
title = {A Graph Watershed Method for Analysis and Quantification of Neurite Branching Structure},
year = {2009},
month = {13-17 July},
volume = {},
booktitle = {Proceedings of the 18th World IMACS/MODSIM Congress},
editor = {},
organization = {},
pages = {762--767},
publisher = {},
address = {Cairns, Australia} 
}

  4. S. Mayo, R. Evans, F. Chen, and R. Lagerstrom. X-ray Phase Contrast Micro-Tomography and Image Analysis of Wood Microstructure. In Proceedings of the 9th International Conference on X-Ray Microscopy, Zurich, Switzerland, 21-25 July 2009. 
    @inproceedings{mayo-lagerstrom09,
author = {S. Mayo and R. Evans and F. Chen and R. Lagerstrom},
title = {X-ray Phase Contrast Micro-Tomography and Image Analysis of Wood Microstructure},
year = {2009},
month = {21-25 July},
volume = {},
booktitle = {Proceedings of the 9th International Conference on X-Ray Microscopy},
editor = {},
organization = {},
pages = {},
publisher = {},
address = {Zurich, Switzerland} 
}

  5. K. Mele, A. Coster, J. G. Burchfield, J. Lopez, D. E. James, W. E. Hughes, and P. Vallotton. Automatic Identification of Fusion Events in TIRF Microscopy Image Sequences. In ICCV09 1st Workshop on Video-oriented Object and Event Classification (VOEC'09), Kyoto, Japan, pages 578--584, 28 September 2009. 
    @inproceedings{mele-etal09voec,
author = {K. Mele and A. Coster and J. G. Burchfield and J. Lopez and D. E. James and W. E. Hughes and P. Vallotton},
title = {Automatic Identification of Fusion Events in TIRF Microscopy Image Sequences},
year = {2009},
month = {28 September},
volume = {},
booktitle = {ICCV09 1st Workshop on Video-oriented Object and Event Classification (VOEC'09)},
editor = {},
organization = {},
pages = {578--584},
publisher = {},
address = {Kyoto, Japan} 
}

  6. E. Urbach. Contextual Image Filtering. In Image and Vision Computing New Zealand, Wellington, New Zealand, pages 299--303, 23-25 November 2009. 
    @inproceedings{urbach:context2009,
author = {E. Urbach},
title = {Contextual Image Filtering},
year = {2009},
month = {23-25 November},
volume = {},
booktitle = {Image and Vision Computing New Zealand},
editor = {},
pages = {299--303},
organization = {},
address = {Wellington, New Zealand} 
}

  7. P. Vallotton, C. Sun, D. Wang, P. Ranganathan, L. Turnbull, and C. Whitchurch. Segmentation and tracking of individual Pseudomonas aeruginosa bacteria in dense populations of motile cells. In Image and Vision Computing New Zealand, Wellington, New Zealand, pages 221--225, 23-25 November 2009. 
    @inproceedings{vallotton-etal09,
author = {P. Vallotton and C. Sun and D. Wang and P. Ranganathan and L. Turnbull and C. Whitchurch},
title = {Segmentation and tracking of individual Pseudomonas aeruginosa bacteria in dense populations of motile cells},
year = {2009},
month = {23-25 November},
volume = {},
booktitle = {Image and Vision Computing New Zealand},
editor = {},
pages = {221--225},
organization = {},
address = {Wellington, New Zealand} 
}

  8. D. Wang, D. Bourke, L. Domanski, and P. Vallotton. Multicore-based high performance image analysis for batch processing in drug discovery. In Proceedings of the 18th World IMACS/MODSIM Congress, Cairns, pages 1080--1086, 13-17 July 2009. 
    @inproceedings{wang-vallotton09modsim,
author = {D. Wang and D. Bourke and L. Domanski and P. Vallotton},
title = {Multicore-based high performance image analysis for batch processing in drug discovery },
year = {2009},
month = {13-17 July},
volume = {},
booktitle = {Proceedings of the 18th World IMACS/MODSIM Congress},
editor = {},
organization = {},
pages = {1080--1086},
publisher = {},
address = {Cairns} 
}

  9. W. Yu, H. K. Lee, S. Hariharan, S. Shvetha, P. Vallotton, and S. Ahmed. Segmentation of Neural Stem/Progenitor Cells Nuclei within 3-D Neurospheres. In Proceedings of the 5th International Symposium on Advances in Visual Computing: Part I, Las Vegas, Nevada, USA, pages 531--543, November 30 - December 2 2009. 
    @inproceedings{Yu09ISVC,
author = {W. Yu and H. K. Lee and S. Hariharan and S. Shvetha and P. Vallotton and S. Ahmed},
title = {Segmentation of Neural Stem/Progenitor Cells Nuclei within 3-D Neurospheres},
year = {2009},
month = {November 30 - December 2},
volume = {},
booktitle = {Proceedings of the 5th International Symposium on Advances in Visual Computing: Part I},
editor = {},
organization = {},
pages = {531--543},
publisher = {},
address = {Las Vegas, Nevada, USA} 
}

Miscellaneous
  1. K. Mele, J. G. Burchfield, D. E. James J. Lopez, W. E. Hughes, A. Coster, and P. Vallotton. TIRF Microscopy Software for Automated Vesicle Fusion Detection. American Biotechnology Laboratory, 27(10):8-9, October 2009. 
    @misc{mele-etal09abl,
author = {K. Mele and J. G. Burchfield and J. Lopez, D. E. James and W. E. Hughes and A. Coster and P. Vallotton},
title = {TIRF Microscopy Software for Automated Vesicle Fusion Detection},
howpublished = {American Biotechnology Laboratory, 27(10):8-9},
year = {2009},
month = {October},
url = {} 
}


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