Publications

Quantitative Imaging


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Publications of year 2014
Articles in journal or book chapters
  1. N. M. Altarawneh, S. Luo, B. Regan, C. Sun, and F. Jia. Global Threshold and Region-based Active Contour Model for Accurate Image Segmentation. Signal and Image Processing: An International Journal, 5(3):1--11, June 2014. [DOI] 
    @article{altarawneh-etal14sipij,
author = {N. M. Altarawneh and S. Luo and B. Regan and C. Sun and F. Jia},
title = {Global Threshold and Region-based Active Contour Model for Accurate Image Segmentation},
year = {2014},
month = {June},
volume = {5},
number = {3},
journal = {Signal and Image Processing: An International Journal},
doi = {http://doi.org/10.5121/sipij.2014.5301},
pages = {1--11} 
}

  2. Z. Liu, F. Zhou, X. Chen, X. Bai, and C. Sun. Iterative infrared ship target segmentation based on multiple features. Pattern Recognition, 47(9):2839--2852, September 2014. [DOI] 
    @article{liu-etal14pr,
author = {Z. Liu and F. Zhou and X. Chen and X. Bai and C. Sun},
title = {Iterative infrared ship target segmentation based on multiple features},
year = {2014},
month = Sep,
volume = {47},
number = {9},
journal = pr,
pages = {2839--2852},
doi = {http://doi.org/10.1016/j.patcog.2014.03.005} 
}

  3. K. Mele, B. M. T. Lekamge, V. Fazio, and J. Newman. Using Time-Courses to Enrich the Information Obtained from Images of Crystallization Trials. Crystal Growth & Design, 14(1):261--269, 2014. [DOI] 
    @article{mele-etal14,
author = {Mele, K. and Lekamge, B. M. T. and Fazio, V. and Newman, J.},
title = {Using Time-Courses to Enrich the Information Obtained from Images of Crystallization Trials},
year = {2014},
month = {},
volume = {14},
number = {1},
journal = {Crystal Growth \& Design},
pages = {261--269},
doi = {http://doi.org/10.1021/cg4014569} 
}

  4. K. Mele, R. Li, V. Fazio, and J. Newman. Quantifying the quality of the experiments used to grow protein crystals: the iQC suite. Journal of Applied Crystallography, 47(3):1097--1106, June 2014. [DOI] 
    @article{mele-etal14jac,
author = {Mele, K. and Li, R. and Fazio, V. and Newman, J.},
title = {Quantifying the quality of the experiments used to grow protein crystals: the {iQC} suite},
year = {2014},
month = {June},
volume = {47},
number = {3},
journal = {Journal of Applied Crystallography},
pages = {1097--1106},
doi = {http://doi.org/10.1107/S1600576714009728} 
}

  5. C. Nguyen, D. Lovell, M. Adcock, and J. La Salle. Capturing natural-colour 3D models of insects for species discovery and diagnostics. PLoS One, 9(4):e94346, 2014. [DOI] 
    @article{Nguyen2014,
title={Capturing natural-colour 3D models of insects for species discovery and diagnostics},
author={Nguyen, C. and Lovell, D. and Adcock, M. and {La Salle}, J.},
journal={PLoS One},
volume={9},
number={4},
year={2014},
pages = {e94346},
publisher={Public Library of Science},
doi = {http://doi.org/10.1371/journal.pone.0094346},

}

  6. M. Payne, D. Wang, C. Sinclair, R. Kapsa, A. Quigley, G. Wallace, J. Razal, R. Baughman, G. Münch, and P. Vallotton. Automated quantification of neurite outgrowth orientation distributions on patterned surfaces. Journal of Neural Engineering, 11(4):046006, 2014. [DOI] 
    @article{payne-etal14,
author = {Payne, M. and Wang, D. and Sinclair, C. and Kapsa, R. and Quigley, A. and Wallace, G. and Razal, J. and Baughman, R. and M\"unch, G. and Vallotton, P.},
title = {Automated quantification of neurite outgrowth orientation distributions on patterned surfaces},
year = {2014},
month = {},
volume = {11},
number = {4},
journal = {Journal of Neural Engineering},
pages = {046006},
doi = {http://doi.org/10.1088/1741-2560/11/4/046006} 
}

  7. S. Rueda, S. Fathima, C. Knight, M. Yaqub, A. T. Papageorghiou, B. Rahmatullah, A. Foi, M. Maggioni, A. Pepe, J. Tohka, R. V. Stebbing, J. E. McManigle, A. Ciurte, X. Bresson, M. B. Cuadra, C. Sun, G. V. Ponomarev, M. S. Gelfand, M. D. Kazanov, C.-W. Wang, H.-C. Chen, C.-W. Peng, C.-M. Hung, and J. A. Noble. Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge. IEEE Transactions on Medical Imaging, 33(4):797--813, April 2014. [DOI] 
    @article{rueda-etal14,
author = {S. Rueda and S. Fathima and C. Knight and M. Yaqub and A. T. Papageorghiou and B. Rahmatullah and A. Foi and M. Maggioni and A. Pepe and J. Tohka and R. V. Stebbing and J. E. McManigle and A. Ciurte and X. Bresson and M. B. Cuadra and C. Sun and G. V. Ponomarev and M. S. Gelfand and M. D. Kazanov and C.-W. Wang and H.-C. Chen and C.-W. Peng and C.-M. Hung and J. A. Noble},
title = {Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge},
year = {2014},
month = {April},
volume = {33},
number = {4},
journal = {IEEE Transactions on Medical Imaging},
doi = {http://doi.org/10.1109/TMI.2013.2276943},
pages = {797--813} 
}

  8. R. Su, C. Sun, C. Zhang, and T. D. Pham. A Novel Method for Dendritic Spines Detection Based on Directional Morphological Filter and Shortest Path. Computerized Medical Imaging and Graphics, 38(8):793--802, December 2014. [DOI] 
    @article{su-etal14cmig,
author = {R. Su and C. Sun and C. Zhang and T. D. Pham},
title = {A Novel Method for Dendritic Spines Detection Based on Directional Morphological Filter and Shortest Path},
year = {2014},
month = Dec,
volume = {38},
number = {8},
journal = {Computerized Medical Imaging and Graphics},
pages = {793--802},
doi = {http://doi.org/10.1016/j.compmedimag.2014.07.006} 
}

  9. R. Su, C. Sun, C. Zhang, and T. D. Pham. A New Method for Linear Feature and Junction Enhancement in 2D Images based on Morphological Operation, Oriented Anisotropic Gaussian Function and Hessian Information. Pattern Recognition, 47(10):3193--3208, October 2014. [DOI] 
    @article{su-etal14pr,
author = {R. Su and C. Sun and C. Zhang and T. D. Pham},
title = {A New Method for Linear Feature and Junction Enhancement in {2D} Images based on Morphological Operation, Oriented Anisotropic {G}aussian Function and {H}essian Information},
year = {2014},
month = Oct,
volume = {47},
number = {10},
journal = pr,
pages = {3193--3208},
doi = {http://doi.org/10.1016/j.patcog.2014.04.024} 
}

  10. X. Tan, C. Sun, X. Sirault, R. Furbank, and T. D. Pham. Stereo Matching using Cost Volume Watershed and Region Merging. Signal Processing: Image Communication, 29(10):1232--1244, November 2014. [DOI] 
    @article{tan-etal14spic,
author = {X. Tan and C. Sun and X. Sirault and R. Furbank and T. D. Pham},
title = {Stereo Matching using Cost Volume Watershed and Region Merging},
year = {2014},
month = Nov,
volume = {29},
number = {10},
journal = {Signal Processing: Image Communication},
pages = {1232--1244},
doi = {http://doi.org/10.1016/j.image.2014.06.002} 
}

  11. H. Vindin, L. Bischof, P. Gunning, and J. Stehn. Validation of an Algorithm to Quantify Changes in Actin Cytoskeletal Organization for High-Throughput Analysis. Journal of Biomolecular Screening, 19(3):354--368, 2014. [DOI] 
    @article{Vindin-etal2014,
author = {H. Vindin and L. Bischof and P. Gunning and J. Stehn},
title= {Validation of an Algorithm to Quantify Changes in Actin Cytoskeletal Organization for High-Throughput Analysis},
year = {2014},
pages = {354--368},
volume = {19},
number = {3},
doi = {http://doi.org/10.1177/1087057113503494},
journal = {Journal of Biomolecular Screening} 
}

  12. D. Wang, D. Bourke, L. Domanski, and P. Vallotton. Speeding up the Analysis of Neuron Morphology using Parallel Processing. Journal of Molecular Imaging & Dynamics, 4:115, 2014. [DOI] 
    @article{wang-etal14jmid,
author = {Wang, D. and Bourke, D. and Domanski, L. and Vallotton, P.},
title = {Speeding up the Analysis of Neuron Morphology using Parallel Processing},
year = {2014},
volume = {4},
month = {},
journal = {Journal of Molecular Imaging & Dynamics},
number = {},
doi = {http://doi.org/10.4172/2155-9937.1000115},
pages = {115} 
}

  13. A. Whan, A. Smith, C. Cavanagh, J.-P. Ral, L. Shaw, C. Howitt, and L. Bischof. GrainScan: a low cost, fast method for grain size and colour measurements. Plant Methods, 10(1):23, 2014. [DOI] 
    @Article{25050131,
AUTHOR = {Whan, A. and Smith, A. and Cavanagh, C. and Ral, J.-P. and Shaw, L. and Howitt, C. and Bischof, L.},
TITLE = {GrainScan: a low cost, fast method for grain size and colour measurements},
JOURNAL = {Plant Methods},
VOLUME = {10},
YEAR = {2014},
NUMBER = {1},
PAGES = {23},
DOI = {http://doi.org/10.1186/1746-4811-10-23} 
}

  14. L. Zhu and D. Wang. Suppression of Ring artifacts in Synchrotron Radiation Images Using Heterogeneous Computing based on Improved Wavelet. Journal of Computational Information Systems, 10(2):523--530, 2014. 
    @article{Zhu-etal14JCIS,
author = {L. Zhu and D. Wang},
title = {Suppression of Ring artifacts in Synchrotron Radiation Images Using Heterogeneous Computing based on Improved Wavelet},
year = {2014},
month = {},
volume = {10},
number = {2},
doi = {},
journal = {Journal of Computational Information Systems},
pages = {523--530} 
}

  15. L. Zhu, D. Wang, and H. Wang. An improved method for the removal of ring artifacts in synchrotron radiation images by using GPGPU computing with compute unified device architecture. Concurrency and Computation: Practice and Experience, 26(18):2880--2892, December 2014. [DOI] 
    @article{zhu-etal14,
author = {L. Zhu and D. Wang and H. Wang},
title = {An improved method for the removal of ring artifacts in synchrotron radiation images by using {GPGPU} computing with compute unified device architecture},
year = {2014},
volume = {26},
month = {Dec},
journal = {Concurrency and Computation: Practice and Experience},
number = {18},
doi = {http://doi.org/10.1002/cpe.3183},
pages = {2880--2892} 
}

Conference articles
  1. M. Adcock, C. Nguyen, D. Lovell, and J. La Salle. Accelerating entomology with Web3D insects. In Proceedings of the 19th International ACM Conference on 3D Web Technologies, pages 143--143, 2014. ACM. 
    @inproceedings{adcock2014accelerating,
title={Accelerating entomology with Web3D insects},
author={Adcock, M. and Nguyen, C. and Lovell, D. and La Salle, J.},
booktitle={Proceedings of the 19th International ACM Conference on 3D Web Technologies},
pages={143--143},
year={2014},
organization={ACM} 
}

  2. N. M. Altarawneh, S. Luo, B. Regan, and C. Sun. Liver segmentation from CT images using a modified distance regularized level set model based on a novel balloon force. In International Conference on Signal, Image Processing and Multimedia, Sydney, Australia, pages 161--170, 27-28 December 2014. [DOI] 
    @inproceedings{altarawneh-etal14spm,
author = {N. M. Altarawneh and S. Luo and B. Regan and C. Sun},
title = {Liver segmentation from {CT} images using a modified distance regularized level set model based on a novel balloon force},
year = {2014},
month = {27-28 December},
volume = {},
booktitle = {International Conference on Signal, Image Processing and Multimedia},
editor = {},
organization = {},
pages = {161--170},
doi = {http://doi.org/10.5121/csit.2014.41212},
publisher = {},
address = {Sydney, Australia} 
}

  3. N. M. Altarawneh, S. Luo, B. Regan, and C. Sun. A Novel Global Threshold-based Active Contour Model. In 2nd International Conference on Signal, Image Processing and Pattern Recognition, Sydney, Australia, pages 245--254, 21-22 February 2014. [DOI] 
    @inproceedings{altarawneh-etal14sipp,
author = {N. M. Altarawneh and S. Luo and B. Regan and C. Sun},
title = {A Novel Global Threshold-based Active Contour Model},
year = {2014},
month = {21-22 February},
volume = {},
booktitle = {2nd International Conference on Signal, Image Processing and Pattern Recognition},
editor = {},
organization = {},
pages = {245--254},
doi = {http://doi.org/10.5121/csit.2014.4220},
publisher = {},
address = {Sydney, Australia} 
}

  4. P. Gough, X. Ho, K. Dunn, and T. Bednarz. Art and Chartjunk: A Guide for NEUVis. In 7th International Symposium on Visual Information Communication and Interaction, Sydney, Australia, August 2014. 
    @inProceedings{Gough-etal2014vinci,
author = "P. Gough and X. Ho and K. Dunn and T. Bednarz",
title = "Art and Chartjunk: A Guide for NEUVis",
volume = "",
pages = "",
year = 2014,
booktitle = "7th International Symposium on Visual Information Communication and Interaction",
editor = "",
month = "August",
address = {Sydney, Australia} 
}

  5. M. Hosseini, T. Bednarz, and A. Sowmya. Multi-users real-time interaction with baterial biofilm images using Augmented Reality. In HCI International, Greece, 22-27 June 2014. 
    @inProceedings{Hosseini2014HCI,
author = "M. Hosseini and T. Bednarz and A. Sowmya",
title = "Multi-users real-time interaction with baterial biofilm images using Augmented Reality",
volume = "",
pages = "",
year = 2014,
booktitle = "HCI International",
editor = "",
month = "22-27 June",
address = {Greece} 
}

  6. D. Jenkins, M. R. Mahoney, R. H. Pearce, A. D. Miller, S. Mayo, D. Wang, R. Roest, H. Lomas, and R. Li. Micro-CT analysis of the microstructure of metallurgical coke for evaluation of coke quality. In the 2nd International Congress on 3D Materials Science, Annecy, France, 29 June - 2 July 2014. 
    @inproceedings{Jen-etal14IC3DMS,
author = {D. Jenkins and M. R. Mahoney and R. H. Pearce and A. D. Miller and S. Mayo and D. Wang and R. Roest and H. Lomas and R. Li},
title = {Micro-CT analysis of the microstructure of metallurgical coke for evaluation of coke quality},
year = {2014},
month ={29 June - 2 July},
volume = {},
booktitle = { the 2nd International Congress on 3D Materials Science},
editor = {},
organization = {},
pages = {},
publisher = {},
address = {Annecy, France},
url = {} 
}

  7. L. Jiang, S. Luo, and J. Li. Intelligent electrical event recognition on general household power appliances. In 15th IEEE Workshop on Control and Modeling for Power Electronics, Santander, Spain , 22-25 June 2014. IEEE. 
    @inproceedings{Jiang-etal14iwcmpwe,

 author = {L. Jiang and S. Luo and J. Li},

 title = {Intelligent electrical event recognition on general household power appliances},

 year = {2014},

 month = {22-25 June},

 volume = {},

 booktitle = {15th IEEE Workshop on Control and Modeling for Power Electronics},

 editor = {},

 organization = {},

 doi = {},

 pages = {},

 publisher = {IEEE},

 address = {Santander, Spain}
 
}

  8. Z. Liu, C. Sun, X. Bai, and F. Zhou. Infared ship target image smoothing based on adaptive range bandwidth mean shift. In Digital Image Computing: Techniques and Applications, Wollongong, Australia, pages 375--382, 25-27 November 2014. [DOI] 
    @inproceedings{liu-etal14dicta,
author = {Z. Liu and C. Sun and X. Bai and F. Zhou},
title = {Infared ship target image smoothing based on adaptive range bandwidth mean shift},
year = {2014},
volume = {},
month = {25-27 November},
booktitle = {Digital Image Computing: Techniques and Applications},
editor = {},
organization = {},
pages = {375--382},
publisher = {},
doi = {http://vision-cdc.csiro.au/changs/doc/liu-etal14dicta.pdf},
address = {Wollongong, Australia},

}

  9. S. Luo and J. Li. Accurate Object Segmentation Using Novel Active Shape and Appearance Models Based on Support Vector Maching Learning. In 4th International Conference on Audio, Language and Image Processing, Shanghai, China , pages 347--351, 7-9 July 2014. IEEE. 
    @inproceedings{Luo-etal14icalip,

 author = {S. Luo and J. Li},

 title = {Accurate Object Segmentation Using Novel Active Shape and Appearance Models Based on Support Vector Maching Learning},

 year = {2014},

 month = {7-9 July},

 volume = {},

 booktitle = {4th International Conference on Audio, Language and Image Processing},

 editor = {},

 organization = {},

 doi = {},

 pages = {347--351},

 publisher = {IEEE},

 address = {Shanghai, China}
 
}

  10. X. Tan, C. Sun, and T. D. Pham. Multipoint Filtering with Local Polynomial Approximation and Range Guidance. In Proceedings of Computer Vision and Pattern Recognition, Columbus, Ohio, USA, pages 2941--2948, 24-27 June 2014. IEEE. [DOI] 
    @inproceedings{tan-etal14cvpr,
author = {X. Tan and C. Sun and T. D. Pham},
title = {Multipoint Filtering with Local Polynomial Approximation and Range Guidance},
year = {2014},
month = {24-27 June},
volume = {},
booktitle = cvpr,
editor = {},
organization = {IEEE},
doi = {http://doi.org/10.1109/CVPR.2014.376},
pages = {2941--2948},
publisher = {},
address = {Columbus, Ohio, USA} 
}

  11. X. Tan, C. Sun, D. Wang, Y. Guo, and T. D. Pham. Soft Cost Aggregation with Multi-Resolution Fusion. In European Conference on Computer Vision, volume V, Zurich, Switzerland, pages 17--32, 6-12 September 2014. [DOI] 
    @inproceedings{tan-etal14eccv,
author = {X. Tan and C. Sun and D. Wang and Y. Guo and T. D. Pham},
title = {Soft Cost Aggregation with Multi-Resolution Fusion},
year = {2014},
month = {6-12 September},
volume = {V},
booktitle = {European Conference on Computer Vision},
editor = {},
organization = {},
doi = {http://doi.org/10.1007/978-3-319-10602-1_2},
pages = {17--32},
publisher = {},
address = {Zurich, Switzerland} 
}

  12. D. Wang, H. Tan, R. Li, Y. He, and T. Xiao. Automated Quantification of 3D Vasculature Using Synchrotron Radiation X-Ray Microtomography. In The 12th International Conference on X-Ray Microscopy, Melbourne, Australia, 26-31 October 2014. 
    @inproceedings{wang-etal14XRM,
author = {D. Wang and H. Tan and R. Li and Y. He and T. Xiao},
title = {Automated Quantification of 3D Vasculature Using Synchrotron Radiation X-Ray Microtomography},
year = {2014},
month ={26-31 October},
volume = {},
booktitle = { The 12th International Conference on X-Ray Microscopy},
editor = {},
organization = {},
pages = {},
publisher = {},
address = {Melbourne, Australia},
url = {} 
}

  13. F. Westling, C. Sun, and D. Wang. A modular learning approach for fish counting and measurement using stereo baited remote underwater video. In Digital Image Computing: Techniques and Applications, Wollongong, Australia, pages 263--269, 25-27 November 2014. [DOI] 
    @inproceedings{westling-etal14dicta,
author = {F. Westling and C. Sun and D. Wang},
title = {A modular learning approach for fish counting and measurement using stereo baited remote underwater video},
year = {2014},
month = {25-27 November},
volume = {},
booktitle = {Digital Image Computing: Techniques and Applications},
editor = {},
organization = {},
pages = {263--269},
publisher = {},
doi = {http://vision-cdc.csiro.au/changs/doc/westling-etal14dicta.pdf},
address = {Wollongong, Australia} 
}

Miscellaneous
  1. D. Lovell, B. Mantle, C. Nguyen, J. La Salle, and M. Adcock. Big tick for entomologists and biosecurity: 3D colour scans of insects. ECOS, 195, 2014. 
    @misc{lovell2014big,
title={Big tick for entomologists and biosecurity: 3D colour scans of insects},
author={Lovell, D. and Mantle, B. and Nguyen, C. and La Salle, J. and Adcock, M.},
howpublished = {ECOS, 195},
pages={},
year={2014},
publisher={CSIRO Publishing} 
}


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