Since we have recently migrated this code from make to autoconf, 
there may be some historical ideocynrasies that may confuse.

Typically we have organinized the package to use:

	./src 	The library source code
	./doc	Where original documentation is kept
	./dox	Where the doxygen documentation is built
	./apps	Applications that use the libraries
	./test  A suite of test scripts 


If you want to edit the Doxygen configuration, you should edit:
	./dox/Doxygen.in
	./dox/Makefile.am

If you do this run
	./congig.status

You can also edit
	./dox/Mainfoot.html
	./doc/Mainpage.dox

Errors will be reported to 
	./dox/doxygen.warnings

To link against matlab at CSIRO, append the following to the configure invocation:
matlab_CPPFLAGS=-I/apps/matlab/extern/include matlab_LIBDIR=/apps/matlab/bin/glnx86/
