DNA submissions to reference libraries
SEA-MES has collected samples for a wide range of DNA libraries
Chromosome level assembly for Jackass Morwong (Nemadactylus macropterus)
| Sample type | Taxa | Library | Submitter |
| Tissue | Pink Ling (Genypterus blacodes) | Chromosomal level genome – pending – Vertebrate Genome Project | Sharon.Hook@csiro.au |
| Scaffold level genome with Applied Genomics Initiative: NCBI Pink Ling submission | Sharon.Hook@csiro.au | ||
| Eastern Redfish (Centroberyx affinus) | Scaffold level genome with Applied Genomics Initiative: NCBI Eastern redfish submission | Sharon.Hook@csiro.au | |
| Chinaman LeatherJacket (Nelusetta ayraudi) | Scaffold level genome with Applied Genomics Initiative: NCBI Nelusetta ayraudi submission | Sharon.Hook@csiro.au | |
| Jackass Morwong (Nemadactylus macropterus) | Chromosomal level genome pending – Bioplatforms Australia and Applied Genomics Initiative | Sharon.Hook@csiro.au | |
| Tissue | Sponges (200 samples) | National Biodiversity DNA Library | Caroline.Sutton@csiro.au |
| Tissue | Fish (145 reference sequences) | GenBank accession numbers PP661038-PP661221 | sahan.jayasinghe@csiro.au john.pogonoski@csiro.au sharon.appleyard@csiro.au |
| Environmental DNA (CTD water) & Environmental DNA (OCD / DTC) | Sequenced DNA barcode markers for fish, metazoans, eukaryotes, and other taxonomic groups | eDNA sequences (>180 million sequences in >2000 fastq files) and metadata uploaded to the NCBI Sequence Read Archive under BioProject PRJNA1263580: “Environmental DNA measuring offshore marine biodiversity in southeast Australia”. | bruce.deagle@csiro.au sahan.jayasinghe@csiro.au cindy.bessey@csiro.au lev.bodrossy@csiro.au katrina.west@csiro.au |
| Multi-net ethanol preserved plankton | Crustacea (krill, copepods, amphipods and cladoceans), Chaetognatha, Cnidaria (Siphonophorae, hydrozoan jellies) and Chordata (Appendicularia) | National Biodiversity DNA Library | felicity.mcennulty@csiro.au sahan.jayasinghe@csiro.au |
| Tissue | Actinopterygii & Chondrichthyes (fish, sharks and rays – 140 reference COI sequences) | Barcode of Life Datasystem | sharon.appleyard@csiro.au john.pogonoski@csiro.au |
| Tissue | Actinopterygii (fish – representative species, skimmed mtDNA genomes) | National Biodiversity DNA Library | sharon.appleyard@csiro.au john.pogonoski@csiro.au |
| Tissue | Nemadactylus macropterus (Jackass Morwong), n=188 Reduced representation sequencing (Diversity Arrays), SNPs (FASTQ) | CSIRO | olivia.wilks@csiro.au sharon.appleyard@csiro.au madeline.green@utas.edu.au k.evans@unesco.org |
| Tissue | Platycephalus richardsoni (Tiger Flathead), n=188 Reduced representation sequencing (Diversity Arrays), SNPs (FASTQ), | CSIRO | amelia.jensen@utas.edu.au sharon.appleyard@csiro.au madeline.green@utas.edu.au k.evans@unesco.org |
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