References

Angelini, S., Hillary, R., Morello, E.B., Plagányi, É.E., Martinelli, M., Manfredi, C., Isajlović, I. & Santojanni, A. 2016. An Ecosystem Model of Intermediate Complexity to test management options for fisheries: A case study. Ecological Modelling, 319, pp.218-232. https://doi.org/10.1016/j.ecolmodel.2015.07.031

Blamey, L.K., Plagányi, É.E. & Branch, G.M. 2014. Was overfishing of predatory fish responsible for a lobster-induced regime shift in the Benguela?  Ecological Modelling 273: 140-150. DOI: 10.1016/j.ecolmodel.2013.11.004

Blamey, L.K., Plagányi, É.E., Robins, J., Kenyon, R., Deng, R.A., Hughes, J. & Kim, S. 2023. Altering river flow impacts estuarine species and catches: lessons from giant mud crabs. ICES Journal of Marine Science 80(9), pp.2295-2312.

Collie, J., Botsford, L., Hastings, A., Kaplan, I., Largier, J., Livingston, P., Plagányi, É.E., Rose, K., Wells, B., Werner, F. 2016. Ecosystem models for fisheries management: finding the sweet spot. Fish and Fisheries 17:101-125. DOI: 10.1111/faf.12093

Condie, S., Plagányi, E., Morello, E., Hock, K., Beeden, R. 2018. Great Barrier Reef recovery through multiple interventions. Conservation Biology 32(6): 1356-1367 doi:10.1111/cobi.13161.

Morello, E., Plagányi, É., Babcock, R., Sweatman, H., Hillary, R., & Punt, A.E. 2014. Model to manage and reduce crown-of-thorns starfish outbreaks. Marine Ecology Progress Series 512: 167–183  doi: 10.3354/meps10858

Plagányi, É. 2013. Fitting the puzzle – modelling species interactions in marine ecosystems. Bulletin of Marine Science 89(1):397–417. DOI: http://dx.doi.org/10.5343/bms.2011.1126

Plagányi, É.E., Babcock, R.C., Rogers, J., Bonin, M. & Morello, E.B. 2020. Ecological analyses to inform management targets for the culling of crown-of-thorns starfish to prevent coral decline. Coral Reefs 39(5), pp.1483-1499. https://doi.org/10.1007/s00338-020-01981-z

Plagányi, É.E., Bell, J.D., Bustamante, R.H., Dambacher, J.M., Dennis, D.M., Dichmont, C.M., Dutra, L.X., Fulton, E.A., Hobday, A.J., van Putten, E.I. & Smith, F. 2011. Modelling climate-change effects on Australian and Pacific aquatic ecosystems: a review of analytical tools and management implications. Marine and Freshwater Research 62(9), pp.1132-1147. https://doi.org/10.1071/MF10279

Plagányi, É.E., Blamey, L.K., Rogers, J.G. & Tulloch, V.J. 2022. Playing the detective: using multispecies approaches to estimate natural mortality rates. Fisheries Research 249, p.106229. https://doi.org/10.1016/j.fishres.2022.106229

Plagányi, É., Ellis, N., Blamey, L.K., Morello, E., Norman-Lopez, A., Robinson, W., Sporcic, M., & Sweatman, H. 2014. Ecosystem modelling provides clues to understanding ecological tipping points. Marine Ecology Progress Series 512: 99–113. doi: 10.3354/meps10909

Plagányi, É., Kenyon, R., Blamey, L., Robins, J., Burford, M., Pillans, R., Hutton, T., Hughes, J., Kim, S., Deng, R.A. & Cannard, T. 2024. Integrated assessment of river development on downstream marine fisheries and ecosystems. Nature Sustainability 7(1), pp.31-44. https://doi.org/10.1038/s41893-023-01238-x

Plagányi, É., Punt, A., Hillary, R., Morello, E., Thebaud, O., Hutton, T., Pillans, R., Thorson, J., Fulton, E.A., Smith, A.D.T., Smith, F., Bayliss, P., Haywood, M., Lyne, V., Rothlisberg, P. 2014. Multi-species fisheries management and conservation: tactical applications using models of intermediate complexity. Fish Fisheries 15:1-22. https://doi.org/10.1111/j.1467-2979.2012.00488.x

Rogers, J.G., & Plagányi, É.E. 2022. Culling corallivores improves short-term coral recovery under bleaching scenarios. Nature Communications, 13(1), p.2520. https://doi.org/10.1038/s41467-022-30213-x

Rogers, J.G., Plagányi, É.E., Babcock, R.C., Fletcher, C.S., & Westcott, D.A. 2023. Improving coral cover using an integrated pest management framework. Ecological Applications 33(8) p.e2913. https://doi.org/10.1002/eap.2913

Tulloch, V.J.D., Plagányi, E., Brown, C., Matear, R. & Richardson, A.J. 2019. Future recovery of baleen whales is imperiled by climate change. Global Change Biology 25(4): 1263-1281. https://doi.org/10.1111/gcb.14573

Tulloch, V. J., Plagányi, É. E., Matear, R., Brown, C. J., & Richardson, A. J. 2018. Ecosystem modelling to quantify the impact of historical whaling on Southern Hemisphere baleen whales. Fish and Fisheries 19(1), 117-137.

Van Putten, E.I., Plagányi, E., Booth, K., Ctivanovic, C., Kelly, R., Punt, A. and S.A. Richards. 2018. A framework for incorporating Sense of Place into the management of marine systems. Ecology and Society 23(4):4. https://doi.org/10.5751/ES-10504-230404

Other MICE references

Drew, K., Cieri, M., Schueller, A.M., Buchheister, A., Chagaris, D., Nesslage, G., McNamee, J.E. & Uphoff Jr, J.H., 2021. Balancing model complexity, data requirements, and management objectives in developing ecological reference points for Atlantic menhaden. Frontiers in Marine Science 8, p.608059. https://doi.org/10.3389/fmars.2021.608059

Holsman, K.K., Ianelli, J., Aydin, K., Punt, A.E. & Moffitt, E.A., 2016. A comparison of fisheries biological reference points estimated from temperature-specific multi-species and single-species climate-enhanced stock assessment models. Deep Sea Research Part II: Topical Studies in Oceanography 134, pp.360-378. https://doi.org/10.1016/j.dsr2.2015.08.001

Kaplan, I.C., Francis, T.B., Punt, A.E., Koehn, L.E., Curchitser, E., Hurtado-Ferro, F., Johnson, K.F., Lluch-Cota, S.E., Sydeman, W.J., Essington, T.E. & Taylor, N. 2019. A multi-model approach to understanding the role of Pacific sardine in the California Current food web. Marine Ecology Progress Series 617, pp.307-321. https://doi.org/10.3354/meps12504

Punt, A. E., MacCall, A. D., Essington, T. E., Francis, T. B., Hurtado-Ferro, F., Johnson, K. F., & Sydeman, W. J. 2016. Exploring the implications of the harvest control rule for Pacific sardine, accounting for predator dynamics: A MICE model. Ecological modelling, 337, 79-95.

Reum, J.C., Townsend, H., Gaichas, S., Sagarese, S., Kaplan, I.C. & Grüss, A., 2021. It’s not the destination, it’s the journey: multispecies model ensembles for ecosystem approaches to fisheries management. Frontiers in Marine Science 8, p.631839. https://doi.org/10.3389/fmars.2021.631839

Russo, T., D’Andrea, L., Franceschini, S., Accadia, P., Cucco, A., Garofalo, G., Gristina, M., Parisi, A., Quattrocchi, G., Sabatella, R.F. & Sinerchia, M. 2019. Simulating the effects of alternative management measures of trawl fisheries in the central Mediterranean Sea: application of a multi-species bio-economic modeling approach. Frontiers in Marine Science 6, p.542. https://doi.org/10.3389/fmars.2019.00542

Thorson, J.T., Adams, G. & Holsman, K. 2019. Spatio‐temporal models of intermediate complexity for ecosystem assessments: a new tool for spatial fisheries management. Fish and Fisheries, 20(6), pp.1083-1099. https://doi.org/10.1111/faf.12398